Address

Istituto di Analisi dei Sistemi ed Informatica "Antonio Ruberti" Via dei Taurini, 19 00185 Roma - Italy
Stanza: 512

Daniele Santoni

Role: Senior Researcher

Research group: BIOSYS

Graduated in Mathematics after a Master in Bioinformatics I obtained a PhD in Genetics and Molecular Biology. Since 2011 I am a research scientist at IASI – CNR. I work in the field of Computational Biology focusing on the application of discrete mathematics and graph theory to biological systems.
Settori ERC:
LS2_11 Bioinformatics and computational biology
PE1_16 Discrete mathematics and combinatorics
PE6_13: Bioinformatics, bio-inspired computing, and natural computing

Recent publications

  1. 2023
    Transcription Factor Driven Gene Regulation in COVID-19 Patients
    Daniele Santoni, Nimisha Ghosh, Carlo Derelitto, Indrajit Saha
  2. 2023
    Peptide Hamming Graphs: a network representation of peptides presented through specific HLAs to identify potential epitope clusters
    Daniele Santoni
  3. 2023
    TRANSPARENT: a Python tool for designing transcription factor regulatory networks
    C Derelitto, Daniele Santoni
  4. 2023
    Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks
    N. Apollonio, D Blankenberg, F Cumbo, P.G. Franciosa, Daniele Santoni
  5. 2022
    An immunological glimpse of human virus peptides: distance from self, MHC class I binding, Proteasome Cleveage, TAP Transport and sequence composition entropy
    Daniele Santoni, Giovanni Felici
  6. 2022
    A novel method for assessing and measuring homophily in networks through second-order statistics
    N. Apollonio, P.G. Franciosa, Daniele Santoni
  7. 2022
    Evaluation of HIV-1 integrase variability by combining computational and probabilistic approaches
    D Vergni, Daniele Santoni, Y Bouba, S Lemme, L Fabeni, L Carioti, A Bertoli, W Gennari, CF Perno, R Gagliardini, F Ceccherini-Silberstein, MM Santoro
  8. 2022
    An Entropy-based study on Mutational Trajectory of SARS-CoV-2 in India
    Daniele Santoni, N Gosh, I Saha
  9. 2021
    The impact of codon choice on translation process in Saccharomyces cerevisiae: folding class, protein function and secondary structure
    Daniele Santoni
  10. 2021
    The impact of flanking sequence features on DNA CpG methylation
    Daniele Santoni

Current projects

  1. BIOSYS2
    BIOSYS2 - Ottimizzazione, modellistica e algoritmi per la bioinformatica e la systems biology
    Research group: BIOSYS
    Start date: 01/01/2016
    End date: 23/11/2023